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Technical Information

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Application notes

“External Applications”: adding functionalities to the CLC Genomics Server
A Sample to Insight® NGS solution for myeloid neoplasms: Redefined amplicon sequencing for low variant detection and interpretation
Assembly and annotation of plastid genomes using QIAGEN CLC Genomics Workbench
CLC Server Command Line Tools: a powerful choice to optimize your analyses
Comparative Analysis of Endophytic Bacterial Microbiomes in Grapevine
Comparative analysis of three bovine genomes
Detection of FLT3 internal tandem duplications with QIAseq Targeted Panels and QIAGEN CLC Genomics Workbench analysis workflows
Determinants of Test Selection for Hereditary Cancer Risk Assessment
Dynamics of microbial communities during coffee fermentation under different processing conditions
Example queries for HGMD MySQL Database
Identification of LOH on chromosome arms 1p and 19q for molecular classification of gliomas with QIAseq Targeted DNA Pro Panels and QIAGEN CLC Genomics Workbench
Improving Microbiome Sequencing using QIAseq® 16S/ITS Panels
Improving structural annotation in complex genomes with QIAGEN CLC Genomics Workbench
LightSpeed – enabling affordable genome sequencing analysis at scale
Methods and Challenges of Variant Annotation in Hereditary Cancer
Multi-Gene Panels in Hereditary Cancer: Cause for Caution?
Prevalence of Hereditary Cancer and Benefits of Multi-Gene Panel Testing
QIAseq Targeted Panel Analysis
Reporting of NGS sequencing data in clinical practice
RNA-seq analysis using long and short reads from pathogen-infected plant tissues
Whole genome functional annotation of Solanum lycopersicum
Workflows for extracting and analyzing microbiomes from whole-genome data of plant and animal species

White papers

A comprehensive analysis of coregulator recruitment, androgen receptor function and gene expression in prostate cancer
A strategy for evaluating genomic assemblies in QIAGEN CLC Genomics Workbench
Challenges in Clinical Testing
Characterizing the Microbiome through Targeted Sequencing of Bacterial 16S rRNA and Fungal ITS Regions
Chip-seq Analysis
CLC read mapper
Copy number variant detection
De novo assembly
Discovering the functional potential of microbial communities through whole metagenome shotgun sequencing analysis
Dynamics in the airway microbiome in children with Cystic fibrosis as revealed by 16S rRNA gene sequencing
How to integrate somatic and germline NGS into routine clinical oncology practice
Know your biomarkers: How PRKD1 is linked to head and neck cancers (HNSCC)
Overcome the four common data challenges in clinical diagnostics
Phenotype-Driven Ranking filter
Probabilistic Variant Caller 1.1
TET2 binds the androgen receptor and loss is associated with prostate cancer
Transcription factor ChIP-seq
Understanding Breast Cancer Subtypes by Jointly Interpreting Tumor Genomes and Transcriptomes
Sample to Insight