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Microbial/Metagenomics

The QIAGEN CLC Genomics ProSuite offers tools and workflows to meet a broad range of bioinformatics needs for microbiome analysis, isolate characterization, functional metagenomics and resistance identification.

Make sense of complex microbial genomic data

Whether you’re focused on public health epidemiology, clinical microbiology research or basic microbial genomics research, QIAGEN CLC Genomics ProSuite provides state-of-the-art tools for strain typing of bacterial, fungal and viral genomes. Uncover critical correlations among microbiota, its metagenome and host. Make sense of complex metagenomic data through tools and streamlined analysis workflows for gene finding, annotation, taxonomic and functional microbiome analysis. Leverage our epidemiological tool set and Antimicrobial Resistance Database for advanced bioinformatics and genomics analysis of antimicrobial resistance (AMR) genes and markers. 

Microbial/Metagenomics tools and applications:

  • Antimicrobial resistance 
  • Strain typing and outbreak analysis
  • Microbiome profiling and functional metagenomics
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Tools and applications for microbial/metagenomics

Antimicrobial resistance

Strain typing and outbreak analysis

Microbiome profiling and functional metagenomics

Antimicrobial resistance

QIAGEN IPA enables prioritization of molecular biomarker candidates based on key biological properties and helps you elucidate mechanisms which link markers to a disease or phenotype of interest.
With QIAGEN OmicSoft, analyze DNA-seq data from thousands of curated public and private datasets, and hone-in on a specific genomic region or gene to identify patterns of genomic alteration or aberration.

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Strain typing and outbreak analysis

QIAGEN IPA offers powerful tools for deep analysis and intuitive visualization of RNA-seq and miRNA data, supporting isoform elucidation. The Isoform View displays expression data associated with each isoform from uploaded RNA-seq data in an intuitive graphical overview. Significantly regulated isoforms in experimental data are intuitively displayed to facilitate exploration of their impact on functional protein domains with links to isoform-specific publications. Understand the structure and function of both human and mouse RNA isoforms (splice variants). For each gene, toggle between human or mouse RefSeq and Ensembl to visualize associated isoforms.
QIAGEN OmicSoft allows you to analyze the underlying RNA-seq data directly in the genome browser to reveal specific RNA transcripts differentially expressed in a particular disease state.

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Microbiome profiling and functional metagenomics

QIAGEN OmicSoft visually compares the mutations in your DNA-seq data to thousands of other datasets to quickly reveal patterns in genomic variation and potential genomic markers for a disease or a physiological state. Perform tumor vs. normal comparisons across thousands of curated public and private datasets to reveal potential genomic biomarker signatures unique to a specific cancer. Search for and retrieve results based on expert-curated metadata for accurate and precise results and data comparison.

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Interested in our
microbial/metagenomics solutions?

Request a consultation with one of our bioinformatics specialists to discuss your specific research requirements.

Analysis and Visualization

Analyze NGS and 'omics data from Sample to Insight using our highly visual and specialized tools for data normalization, quality control, read mapping, gene expression and more

Content and Exploration Databases

Generate insights from complex 'omics data and deepen your understanding of the biological mechanisms hidden in your experiments

Enterprise NGS Solutions

Scale your NGS: From single-user to enterprise-friendly data analysis, our NGS enterprise solutions are scalable and support multiple users in an intuitive way