Accelerate your NGS secondary analysis with the fastest FASTQ to VCF pipeline in the market
With the increasing demand for speed, flexibility, and cost-efficiency in clinical NGS secondary analysis, diagnostic labs need a simple and seamless way to process more sequencing data without extensive time and resource investment.
Paired with QIAGEN’s new LightSpeed Clinical solution, QCI Secondary Analysis provides the fastest, cheapest and highly accurate pipeline currently available for NGS secondary data analysis.
LightSpeed Clinical is a new module for QIAGEN CLC Genomics Workbench Premium that empowers clinical laboratories to perform NGS secondary analysis with high accuracy at unprecedented runtimes.
LightSpeed Clinical processes FASTQ files to produce VCF files containing single nucleotide variants (SNV), insertion–deletion mutation (InDel) and structural variant (SV) calls. The module is deployable using local computers or Amazon Web Services (AWS®) cloud and performs quality and adapter trimming, read mapping, deduplication, local realignment, quality control and variant calling.
Currently, LightSpeed Clinical supports germline pipelines. Support for somatic pipelines will be available Summer 2023.
Requires less than 20 minutes to process one WGS sample at 35x coverage:
Significantly reduces computing costs, requiring less than $0.40 per WGS sample.
Validation rate for WGS variant calls is extremely high, achieving 99% accuracy for more than 90% of the genome.
Go from raw sequencing data to VCF file in five simple steps; Analysis workflows provided for any panel by any vendor.
Enables speed and accuracy without requiring a central processing unit (CPU) or expensive, specialized hardware.
Allows instant scalability from workflow optimization to to high-throughput production.
*Numbers taken directly from vendor websites (December 2022).
QCI Secondary Analysis with LightSpeed Clinical seamless connects to QCI Interpret for an integrated and automated FASTQ to precision report workflow.
Agnostic and scalable cloud-based service for clinical NGS secondary analysis (FASTQ to VCF)
Clinical decision support platform for clinical NGS tertiary analysis (VCF to precision report)
Learn more about QCI Interpret here.
With LightSpeed Clinical you can rapidly process FASTQ files to produce highly accurate VCF files in five simple steps.
Let us help you optimize your NGS analysis pipeline. Our clinical services team is here to answer your questions and help you get from FASTQ to final report in less time, for less money.
Clinical decision support software for germline NGS variant interpretation and reporting.
Clinical decision support software for somatic NGS variant interpretation and reporting.
Out-of-the-box and custom NGS panels enabling digital DNA and RNA sequencing to confidently detect low-frequency variants
LightSpeed Clinical is software module to support NGS secondary analysis. The software is NOT intended as a primary diagnostic tool by physicians or to be used as a substitute for professional healthcare advice. Each laboratory is responsible for ensuring compliance with applicable international, national, and local clinical laboratory regulations and other specific accredidations requirements.