
Release date: 2022-04-19
CLC Genomics Cloud Engine 21.0.5 contains CLC Genomics Server versions 21.0.1, 21.0.2, 21.0.3, 21.0.4, 21.0.5 and 21.0.6.
CLC Genomics Cloud Engine 21.0.5 release page
Upgrading from a CLC Genomics Cloud Engine 21.0.0-4 can be done by following the “Stack upgrade” process described in the GCE Administration manual.
CLC Genomics Cloud Engine 21.0.4 and earlier can no longer be deployed due to configuration changes at AWS. Please upgrade to CLC Genomics Cloud Engine 21.0.5 if continuing to use CLC Workbenches or CLC Servers in the 21 release line. Upgrade to CLC Genomics Cloud Engine 22.0.1 if you can upgrade to CLC Workbenches and CLC Servers in the 22 release line.
For existing GCE 21.x setups in ap-northeast-1 (Tokyo) and us-west-1 (California): Just before running the create_stack.py script in the upgrade process, check that the availability zones in the DB_AZ1 and DB_AZ2 fields in the config/setup.sh file in the GCE administration host root account are available in your region. If they are not, then edit the values in those fields. E.g. for the Tokyo region, DB_AZ1=a and DB_AZ2=c would be acceptable.
Amazon Linux 2 is now used in the AWS Beanstalk apps.
Access to the GCE administration host can be limited to a specified IP or IP range by going to the Network & Security | Security Groups section under EC2 in the AWS Console and finding the GCE administration host. Open the Inbound Rules tab, select the first rule in the list and click on “Edit Inbound Rules”. Click on the “Source” drop down and either choose “Select Custom” and enter an IP or IP range using CIDR notation, or choose “Select My IP” and use the value that is then filled in for you. Save the rules.
The GCE Administration Manual incorrectly states that the IP can be restricted as part of configuring the GCE administration stack using Cloud Formation. Please follow the steps above instead, after the GCE administration stack has been created.
Workflows to be run on the CLC Genomics Cloud Engine 21.0.5 are designed using a CLC Workbench. We recommend using the most up to date compatible versions when working with CLC Genomics Cloud Engine 21.0.5, which are:
Workflows can be submitted for execution using a compatible Workbench with the Cloud Plugin installed, and also via compatible versions of the CLC Genomics Server with the Cloud Server Plugin installed. The versions of Workbenches and CLC Servers compatible with CLC Genomics Cloud Engine 21.0.5 are 21.0.1, 21.0.2, 21.0.3, 21.0.4, 21.0.5 and 21.0.6.
Workflows can also be submitted for execution using the CLC Genomics Cloud Engine Command Line Tools. The corresponding version is 21.0.5. Workflow installer files that are submitted must be made with a CLC Workbench compatible with CLC Genomics Cloud Engine 21.0.5.
This is a compatibility release, as the corresponding client for the CLC Genomics Cloud Engine 21.0.5.
Release date: 2021-08-26
This update contains only changes to the software. There are no changes to the infrastructure configuration.
When upgrading existing installations in the 21.x release line, where the RDS database is not installed in AWS Availability Zones “a” and “b”, then DB availability zones to use must be set in the Admin Host config/setup.sh file. For example, for ap-northeast-1/Tokyo:
DB_AZ1=a
DB_AZ2=c
CLC Genomics Cloud Engine 21.0.4 uses CLC Genomics Server 21.0.5.
Workflows to be run on the CLC Genomics Cloud Engine 21.0.4 are designed using a CLC Workbench. Workflow installer files should be made using a CLC Workbench compatible with the CLC Genomics Server run by GCE. The recommended versions for this purpose for this version are:
CLC Genomics Cloud Engine 21.0.4 contains CLC Genomics Server 21.0.1, 21.0.2, 21.0.3, 21.0.4 and 21.0.5. Workflows can be submitted for execution using a corresponding client Workbench version with the Cloud Plugin installed. Workflows can also be submitted via corresponding versions of the CLC Genomics Server with the Cloud Server Plugin installed.
CLC Genomics Cloud Engine Command Line Tools 21.0.4 is the corresponding client for CLC Genomics Cloud Engine 21.0.4. While we recommend running corresponding versions of service and client, CLC Genomics Cloud Engine Command Line Tools 21.0, 21.0.1, 21.0.2 and 21.0.3 can be used with CLC Genomics Cloud Engine 21.0.4, and CLC Genomics Cloud Engine Command Line Tools 21.0.4 can be used with earlier CLC Genomics Cloud Engine 21.0.x versions.
This is a compatibility release, as the corresponding client for the CLC Genomics Cloud Engine 21.0.4.
Release date: 2021-05-25
This update contains only changes to the software. There are no changes to the infrastructure configuration.
This is a compatibility release, as the corresponding client for the CLC Genomics Cloud Engine 21.0.3.
Workflows to be run on the CLC Genomics Cloud Engine 21.0.3 are designed using a CLC Workbench. The recommended versions for this purpose for this version are:
CLC Genomics Cloud Engine 21.0.3 contains CLC Genomics Server 21.0.1, 21.0.2, 21.0.3 and 21.0.4. Workflows can be submitted for execution using a corresponding client Workbench version with the Cloud Plugin installed. Workflows can also be submitted via corresponding versions of the CLC Genomics Server with the Cloud Server Plugin installed.
The CLC Genomics Cloud Engine Command Line Tools 21.0.3 is the corresponding client for the CLC Genomics Cloud Engine 21.0.3.
While we recommend running corresponding versions of service and client, CLC Genomics Cloud Engine Command Line Tools 21.0.3 can be used with earlier CLC Genomics Cloud Engine 21.0.x versions, and CLC Genomics Cloud Engine Command Line Tools 21.0.3, can be used with earlier CLC Genomics Cloud Engine 21.0.x versions.
Release date: 2021-04-19
This update contains only changes to the software. There are no changes to the infrastructure configuration.
This is a compatibility release, as the corresponding client for the CLC Genomics Cloud Engine 21.0.2.
Workflows to be run on the CLC Genomics Cloud Engine 21.0.2 are designed using a CLC Workbench. The recommended versions for this purpose for this version are:
CLC Genomics Cloud Engine 21.0.2 contains CLC Genomics Server 21.0.1, 21.0.2, and 21.0.3. Workflows can be submitted for execution using a corresponding client Workbench version with the Cloud Plugin installed. Workflows can also be submitted via corresponding versions of the CLC Genomics Server with the Cloud Server Plugin installed.
The CLC Genomics Cloud Engine Command Line Tools 21.0.2 is the corresponding client for the CLC Genomics Cloud Engine 21.0.2.
While we recommend running corresponding versions of service and client, CLC Genomics Cloud Engine Command Line Tools 21.0 can be used with CLC Genomics Cloud Engine 21.0.2, and CLC Genomics Cloud Engine Command Line Tools 21.0.2, can be used with CLC Genomics Cloud Engine 21.0.
Release date: 2021-02-23
This update contains only changes to the software. There are no changes to the infrastructure configuration.
Workflows to be run on the CLC Genomics Cloud Engine 21.0.1 are designed using a CLC Workbench. The recommended versions for this purpose for this version are:
CLC Genomics Cloud Engine 21.0.1 contains CLC Genomics Server 21.0.1, 21.0.2, and 21.0.3. Workflows can be submitted for execution using a corresponding client Workbench version with the Cloud Plugin installed. Workflows can also be submitted via corresponding versions of the CLC Genomics Server with the Cloud Server Plugin installed.
The CLC Genomics Cloud Engine Command Line Tools 21.0.1 is the corresponding client for the CLC Genomics Cloud Engine 20.0.10.
While we recommend running corresponding versions of service and client, CLC Genomics Cloud Engine Command Line Tools 21.0 can be used with CLC Genomics Cloud Engine 21.0.1, and CLC Genomics Cloud Engine Command Line Tools 21.0.1, can be used with CLC Genomics Cloud Engine 21.0.
Release date: 2021-01-12
This update contains changes to the infrastructure as well as the software. Because of the infrastructure changes, it is necessary to redeploy the CLC Genomics Cloud Engine.
Please also refer to the Cloud Plugin 21.0 latest improvements for associated features and improvements affecting the connection to and use of CLC Genomics Cloud Engine 21.0 from CLC Genomics Workbench 21.x and CLC Genomics Server 21.x software.
The CLC Genomics Cloud Engine Command Line Tools 21.0.0 is the corresponding client for the CLC Genomics Cloud Engine 21.0.0.
It is not possible to access the CLC Genomics Cloud Engine 21.0.0 with an earlier version of the CLC Genomics Cloud Engine Command Line Tools. Nor is it possible to access an earlier version of the CLC Genomics Cloud Engine with the CLC Genomics Cloud Engine Command Line Tools 21.0.0.
The CLC Genomics Cloud Engine uses CLC Genomics Server 21.0.1.
Workflows to be run on the CLC Genomics Cloud Engine 21.0.0 are designed using a CLC Workbench. Workflow installer files should be made using a CLC Workbench compatible with the CLC Genomics Server run by GCE. For this release, these are:
Workflows can be submitted to run on CLC Genomics Cloud Engine 21.0.0 from compatible versions of CLC Workbenches with the Cloud Plugin installed and from compatible versions of CLC Genomics Server with the Cloud Server Plugin installed.