QIAGEN CLC Genomics

Complete NGS and 'omics data analysis tools with flexible access, from a laptop to a local server to the cloud

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Experience powerful NGS data analysis capabilities to scale your research

Gain clearer insights into your complex sequencing, NGS or ‘omics data with our comprehensive bioinformatics software for all your genomics, transcriptomics and epigenomics analytic needs. Access feature-rich bioinformatics software that enables you to develop visually striking phylogenetic tools, implement your BLAST searches, design PCR or real-time PCR primers and take advantage of over 10 years of molecular biology tool development.

Explore our NGS and ‘omics data analysis tools for:

Sequencing workflows
Microbial genomics
Biomedical genomics
Enterprise genomics

Any species, any platform, any workflow: The all-purpose power tool for NGS data analysis

• Ready-to-use and flexible workflows: Over a dozen pre-built workflows to accelerate analysis of your cancer and hereditary disease data. Build your own customized analysis workflows for a wide range of both DNA and RNA sequencing data

• Intuitive interface: Interactive visualization of your data linked to a best-in-class track viewer

• Visualize and share results with the built-in Genome Viewer

• Platform independent: Supports common sequencing platforms (Illumina, Ion Torrent, PacBio, Oxford Nanopore and GeneReader) and runs on most operating systems

• Enterprise ready: Support multiple users in an intuitive way, with high-throughput analysis and automation

Tools in the QIAGEN CLC Genomics portfolio:

Sequencing workflows

User-friendly bioinformatics software solutions enable a comprehensive analysis of your NGS data. For basic sequencing analysis, QIAGEN CLC Main Workbench offers core workflows such as DNA and gene expression, primer design, molecular cloning, phylogenetic analyses and data management. QIAGEN CLC Genomics Workbench provides advanced NGS workflows for de novo assembly of whole genomes and transcriptomes, resequencing analysis (WGS, WES and targeted panel support), variant calling, RNA-seq, ChIP-seq and DNA methylation (bisulfite sequencing analysis).

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Microbial genomics

Uncover critical correlations among microbiota, metagenome and host. Easily understand complex metagenomic data through tools and streamlined analysis workflows for gene finding, annotation, taxonomic and functional microbiome analysis. Our solutions for microbial genomics include tools and workflows for a broad range of bioinformatics needs for microbiome analysis, isolate characterization, functional metagenomics, pathogenicity, strain typing and resistance identification.

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Related Resources:

Microbial genomics resources

Biomedical genomics

Empower your biomedical analyses with prebuilt workflows for human, mouse and rat genomics, including support for QIAseq UMI-based NGS library preparation kits and panels. Content includes hereditary disease workflows, oncology somatic mutation detection workflows for cancer FFPE or liquid biopsy (single sample or matched tumor-normal) samples, sensitive detection of SNPs, MNVs, tandem repeats, structural variants, fusion genes and CNVs.

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Enterprise genomics

Grow and scale your NGS capabilities beyond the number of available desktops. Our enterprise NGS solution can be deployed on a local server that manages the submission of many jobs via its own queuing system or through submission of jobs to a third-party grid scheduler. QIAGEN CLC Genomics Cloud Engine makes bioinformatics analysis scalable and accessible to anyone involved in the analysis of NGS data. It lets you build your workflows locally in the QIAGEN CLC Genomics Workbench and then deploy them on Amazon Web Services (AWS) in minutes.

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Plugins and Modules

With many plugins and modules, these feature-rich extensions are seamlessly integrated and provide advanced tools and workflows to meet your specific analysis needs. Some of the most popular plugins include:

QIAGEN CLC Genomics Workbench (functions with plugins)
QIAGEN CLC Genomics ProSuite (functions with plugins)
Biomedical Genomics Analysis plugin
QIAGEN CLC Microbial Genomics Module
QIAGEN CLC Genome Finishing Module
Vector NTI Import

Explore the full list of available plugins:

QIAGEN CLC Plugins

QIAGEN CLC Assembly Cell

The command-line interface of QIAGEN CLC Assembly Cell offers key features to support your assembly projects. These include read mapping, de novo assembly, quality trimming and removal of duplicate reads, as well as further functionalities in scripts and other next-generation sequencing workflows. Run it on your desktop computer or on a large computer cluster. QIAGEN CLC Assembly Cell is accelerated through advanced algorithm implementations which make the software one of the fastest and most accurate packages for NGS data analysis on the market.

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