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Additional Alignments

This plugin allows for use of three additional alignment methods which are otherwise not distributed with CLC workbenches.

Alignment methods

Three different alignment methods are included in this plugin: ClustalW, ClustalO, and Muscle. For more detailed information on each of the alignment methods we encourage you to read the original research papers and the respective websites of the different methods. This paper describes some of the below mentioned algorithms and their strengths [Edgar and Batzoglou, 2006]. 

Method Website Publication Platform
ClustalW More information Thompson et al., 1994 Cross-platform
ClustalO More information Sievers et al., 2011 Cross-platform
Muscle More information Edgar, 2004 Cross-platform

When the plugin is installed, you will see the new alignment methods in the Toolbox under Alignments and Trees -> Additional Alignments.

Downloads

Plugin Manual
Online manual Download manual
Plugin Download
Download plugin
Download Additional Alignments

Version

Platform support

Download

20.0.0

QIAGEN CLC Genomics Workbench


 [20.0.4, 20.0.3, 20.0.2, 20.0.1, 20.0]

QIAGEN CLC Main Workbench


 [20.0.4, 20.0.3, 20.0.2, 20.0.1, 20.0]

1.9.0

QIAGEN CLC Genomics Workbench


 [12.0.4, 12.0.3, 12.0.2, 12.0.1, 12.0]

QIAGEN CLC Main Workbench


 [8.1.4, 8.1.3, 8.1.2, 8.1.1, 8.1]

1.8.0

CLC Sequence Viewer


 [8.0.0]

QIAGEN CLC Genomics Workbench


 [11.0.2, 11.0.1, 11.0.0]

QIAGEN CLC Main Workbench


 [8.0.2, 8.0.1, 8.0.0]

1.7.0

CLC Drug Discovery Workbench


 [4.0]

CLC Sequence Viewer


 [7.8.1, 7.8]

QIAGEN CLC Genomics Workbench


 [10.1.3, 10.1.2, 10.1.1, 10.1.0, 10.0.1, 10.0]

QIAGEN CLC Main Workbench


 [7.9.3, 7.9.2, 7.9.1, 7.9.0, 7.8.1, 7.8]

1.6.0

CLC Drug Discovery Workbench


 [3.0.2, 3.0]

CLC Sequence Viewer


 [7.7.1, 7.7]

QIAGEN CLC Genomics Workbench


 [9.5.4, 9.5.3, 9.5.2, 9.5.1, 9.5, 9.0.1, 9.0]

QIAGEN CLC Main Workbench


 [7.7.3, 7.7.2, 7.7.1, 7.7]

1.5.3

CLC Drug Discovery Workbench


 [2.5.1, 2.5, 2.4.1, 2.4, 2.0]

CLC Sequence Viewer


 [7.6.1, 7.6]

QIAGEN CLC Genomics Workbench


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1, 8.0]

QIAGEN CLC Main Workbench


 [7.6.7, 7.6.6, 7.6.5, 7.6.4, 7.6.3, 7.6.2, 7.6.1, 7.6]

1.5.2

CLC Drug Discovery Workbench


 [1.5.1, 1.5]

CLC Sequence Viewer


 [7.5]

QIAGEN CLC Genomics Workbench


 [7.5.5, 7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5]

QIAGEN CLC Main Workbench


 [7.5.3, 7.5.2, 7.5.1, 7.5]

1.5.1

CLC Drug Discovery Workbench


 [1.0.2, 1.0.1, 1.0]

QIAGEN CLC Genomics Workbench


 [7.0.4, 7.0.3, 7.0.2, 7.0.1, 7.0]

QIAGEN CLC Main Workbench


 [7.0.3, 7.0.2, 7.0.1, 7.0]

1.5.0

QIAGEN CLC Genomics Workbench


 [6.5.2, 6.5.1]

QIAGEN CLC Main Workbench


 [6.9.1]

1.4.5

QIAGEN CLC Genomics Workbench


 [6.5]
Server Plugin Download
Download plugin
Download Additional Alignments Server Plugin

Version

Platform support

Download

20.0.0

QIAGEN CLC Genomics Server


 [20.0.4, 20.0.3, 20.0.2, 20.0.1, 20.0]

1.9.0

QIAGEN CLC Genomics Server


 [11.0.4, 11.0.3, 11.0.2, 11.0.1, 11.0]

1.8.0

Biomedical Genomics Server Solution


 [10.0.2, 10.0.1, 10.0]

QIAGEN CLC Genomics Server


 [10.0.2, 10.0.1, 10.0.0]

1.7.0

Biomedical Genomics Server Solution


 [9.1.3, 9.1.2, 9.1.1, 9.1, 9.0]

QIAGEN CLC Genomics Server


 [9.1.3, 9.1.2, 9.1.1, 9.1.0, 9.0]

1.6.0

Biomedical Genomics Server Solution


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.1, 8.0]

QIAGEN CLC Genomics Server


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.1, 8.0]

1.5.3

Biomedical Genomics Server Solution


 [7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

QIAGEN CLC Genomics Server


 [7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

1.5.2

Biomedical Genomics Server Solution


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

QIAGEN CLC Genomics Server


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1]

1.5.1

Biomedical Genomics Server Solution


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0]

QIAGEN CLC Genomics Server


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0]

Step 1 - About you

Step 2 - Organizational details