Senior Bioinformatics Engineer, QDI


At the heart of QIAGEN’s business is a vision to make improvements in life possible.

We are on an exciting mission to make a real difference in science and healthcare. We are still the entrepreneurial company we started out as and have today achieved a size where we can bring our full power to many initiatives and to our presence across the globe. 
Our most valuable asset are our employees – more than 6000 in over 35 locations around the world. Our ambition is to ensure we have outstanding and passionate people working in the best teams and we are constantly looking for new talent to join us.  
There are few players who have shaped the world of modern science and healthcare as much as QIAGEN, and we have only just started.
If you are looking to advance your career, are seeking new challenges and opportunities, enjoy working in dynamic and international, diverse teams and want to make a real impact on people’s lives, then QIAGEN is where you need to be.

Join us. At QIAGEN, you make a difference every day.

Position Description

QIAGEN Digital Insights is seeking a highly motivated and experienced Bioinformatics Engineer who can contribute his/her own unique perspectives to our collective understanding of genomics and genetics data for biomedical research.

Main responsibilities include:

  • Participating in meetings with clients, colleagues, vendors, or other stakeholders to discuss projects, provide consultation, and develop bioinformatics solutions
  • Provide professional bioinformatics services including NGS analysis, data harmonization, and pipeline and API development, etc
  • Consulting with biotech and pharma professionals across multiple therapeutic areas
  • Collaborating with software developers in the development & modification of commercial bioinformatics software solutions
  • Developing clinical report to customize clinical test configurations
  • Providing consultation for customers and LIMS providers to build robust API interfaces into the Qiagen Clinical Insight platform
  • Collaborate internally with Scientific & Technical Customer Support, marketing, product management and R&D to facilitate the development of new solutions or improvements on existing solutions

Position Requirements

  • PhD degree in Bioinformatics, Biostatistics, Computational Biology or a related discipline plus 3~5 years’ experience OR Master’s degree plus 5~8 years’ experience. Working directly with customers in a consultative role is a plus.
  • Solid track record of research in cancer genomics, immune-oncology or related areas as demonstrated by publications.
  • Experience performing data analysis and integration across various domains (discovery research, biomarker, clinical, biostatistics, bioinformatics), experience working with clinical studies, or a therapeutic area (2+ years relevant experience) is a plus.
  • In-depth experience with developing NGS analysis pipelines for a variety of data types and algorithms (e.g. WGS/WES, panel sequencing, transcriptome sequencing, variant calling and annotations, CNVs).
  • Familiar with public consortium such as TCGA, CCLE, CGCI and ICGC.
  • Working knowledge of LIMS.
  • Experience with sequencing platforms such as Illumina HiSeq, Ion Torrent, Pac Bio.
  • In-depth knowledge of restful APIs is a must.
  • 5 plus years’ experience with programming languages such as Python, Java, bash scripting.
  • Proficiency with HTML/CSS/JavaScript preferred.
  • Knowledge with Database/SQL preferred.
  • Working knowledge of version control tools, lifecycle management software such as JIRA, and Docker.

***Please include code sample piece (API) or GitHub/GitLab link to application.***

Personal Requirements

  • Customer-oriented, enjoys working with customers and helping find solutions.
  • Excellent teamwork skills, has a track record of working highly effectively and collaboratively in multidisciplinary team.
  • Ability to communicate effectively around results and process with biologists and domain experts
  • Strong interpersonal verbal communication skills and effective presentation skills
  • Self-motivated with the ability to work independently and demonstrate initiative
  • Strong ability to multi-task and track ongoing projects
  • Excellent communication skills, and enjoys working in collaborative team environment

QIAGEN requires proof of full COVID-19 vaccination as a condition of employment for new hires in all U.S. states other than Montana effective as of September 1, 2021.  New hires and candidates will be required to present proof of full COVID-19 vaccination within three business days of start date or upon entry into the office (i.e., for interviews), whichever comes first. QIAGEN complies with applicable laws regarding the confidentiality of employee health information and the reasonable accommodation of individuals with disabilities and/or sincerely held religious beliefs.  Candidates who require accommodation should contact This policy is part of QIAGEN’s ongoing efforts to support public health efforts and to ensure the safety and-well-being of its employees, customers, business partners, and community.

What we offer

At the heart of QIAGEN are our people who drive our success. We act with passion, always challenging the status quo to drive innovation and continuous improvement. We inspire with our leadership and make an impact with our actions. We create a collaborative, safe and engaging workplace which forms the basis for high performing individuals and teams. We drive accountability and entrepreneurial decision-making and want you to excel your growth and shape the future of QIAGEN.

QIAGEN is committed to creating a diverse environment and is proud to be an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex (including pregnancy, childbirth, and medical conditions related to pregnancy, childbirth, or breastfeeding), sex stereotyping (including but not limited to assumptions about a person’s appearance or behavior, gender roles, gender expression, or gender identity), gender, gender identity, gender expression, national origin, age, mental or physical disability, ancestry, medical condition, marital status, military or veteran status, citizenship status, sexual orientation, genetic information, or any other status protected by applicable law.

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